1st Workshop on TritiGen COST action FA0604:
Triticeae genomics for the advancement of essential European crops |
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Monday, October 1
8:00-8:45 |
Registration and poster set up |
8:45-9:00 |
Welcome |
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Session 1: WG1: Tools for Assessing and Harvesting Genetic Diversity (DivGen) |
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Chairs: Karl Schmid and Hikmet Budak
09:00 |
Roberto Tuberosa: Genome-wide association mapping for grain yield and drought-related traits in a mini-core collection of elite durum wheat cultivars evaluated in Mediterranean environments
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09:20 |
Andy Flavell: Genomics-Assisted Analysis and Exploitation of Barley Diversity - the EXBARDIV ERA-PG Project
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09:40 |
Etienne Paux: Insertion site-based polymorphism: recycling the 'junk' from the wheat genome
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10:00 |
Ana Casas: Linkage disequilibrium in the Spanish Barley Core Collection
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10:20 |
P. Piffanelli: BARLEYSEL: Assessing domestication effects on candidate genes implicated in controlling frost resistance and malting quality
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10:40 |
Viktor Korzun: Molecular markers and their applications in cereal breeding - from breeders point of view
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11:00 |
Coffee Break and poster viewing
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11:30 |
Hikmet Budak: Organelle genome variation and transient gene expression in the model grass species Brachypodium distachyon, accurate template for wheat and barley
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11:50 |
Andras Balint: Mapping of QTLs for drought tolerance in barley at different developmental stages
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12:10 |
Ahmet Yildirim: Genetic variations are still continuting among and between landraces of wheat in Turkey
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12:30 |
Karl Schmid: Allele mining in wild and cultivated barley
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12:50 |
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13:00-14:00 |
Lunch and poster viewing |
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Session 2: WG2: Accessing the Physical Genome for Sustainability and Quality (PhysGen) |
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Chairs: Pierre Sourdille and Nils Stein
14:00 |
Daniela Schulte: Status of the barley physical map project.
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14:20 |
Robert Kofler: Advances on the 1RS physical map.
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14:40 |
Katerina Pankova: Genetic, physiological and molecular analyses of wheat lines carrying flowering time genes on chromosome 3B substituted from the alternative wheat variety Ceska Presivka
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15:00 |
Nikolai Christov: Identification of cDNAs involved in winter wheat cold acclimation process
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15:20 |
Tzion Fahima: Unraveling the genetic basis of several qualitative and quantitative agronomic traits derived from wild emmer wheat.
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15:40 |
Nicola Pecchioni: Identification and characterization of conserved orthologous markers between barley and Brachypodium.
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16:00-16:30 |
Coffee break and poster viewing
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16:30 |
Jaroslav Dolezel: Production of subgenomic BAC libraries and other recent activities related to chromosome sorting in cereals.
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16:50 |
Kostya Kanyuka: Towards fine mapping of resistance genes to Septoria tritici leaf blotch in hexaploid and diploid wheat
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17:10 |
Boulos Chalhoub: Comparative analysis among homoeologous wheat genomes through large scale sequencing.
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17:30 |
Hélène Bergès: How to preserve, maintain and exploit plant genomic resources generated by international research.
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17:50 |
General discussion |
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Session 3: WG 2A Bioinformatics for WG1 and WG2 |
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Chair: David Marshall
18:00 |
Tatjana Sjakste: Functional significance of the structural rearrangements of candidate genes
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18:20 |
Francois Sabot: Handle the junk - A unified classification system for eukaryotic TEs
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18:40-19:00 |
Thomas Wicker: Sequencing a large genomic region in wheat |
20:30 |
Workshop Dinner |
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Session 4: WG3: Implementation of Genomics Approaches for Understanding Cereal Traits |
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Chairs: Nils Rostoks and Hilde-Gunn Opsahl- Sorteberg
09:00 |
Hilde-Gunn Opsahl Sorteberg: Genes regulating seed development.
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09:20 |
Laura Rossini: Candidate gene and functional genomics approaches for the molecular dissection of barley development.
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09:40 |
Anette Moldestad: Changes in the proteome pattern during grain development of cereals.
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10:00 |
Christine Finnie: Functional proteomics of barley seeds: Integration of the proteome with the genetic map, gene expression and enzyme activities.
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10:20 |
Bill Thomas: Analysis of enzyme activities, wort sugars and barley malting quality.
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10:40 |
Gabor Galiba: From QTLs to genes: Functional genomics of freezing tolerance in cereals.
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11:00-11:30 |
Coffee Break and poster viewing
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11:30 |
Marco Maccaferri: Two major QTLs on chromosomes 2BL and 3BS influence grain yield and other agronomic traits of durum wheat across a broad range of Mediterranean environments.
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11:50 |
Luigi Cattivelli: Parallel pigment and transcriptomic analysis of barley albina and xantha mutants.
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12:30 |
Barbara Steiner: Differential gene expression of wheat genotypes after Fusarium graminearum inoculation analyzed through cDNA-AFLPs
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12:50-13:00 |
General discussion
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13:00-14:00 |
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Session 5: WG 4 Functional Genomics for Testing and Validation of Candidate Genes (FuncGen) |
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Chairs: Søren Rasmussen and Patrizia Galeffi
14:00 |
Günther Schweizer. Mapping and marker development of different scald (Rhynchosporium secalis) resistance genes in barley
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14:20 |
Nicolás Jouve: Characterization of genes involved in homologous recombination in Triticeae. Towards the characterization of the genes involved in gene targeting in Triticum
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14:40 |
Petya K. Christova: Functional analysis of antifungal activities in a wheat multidomain cystatin TaMDC1
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15:00 |
Gerhard Adam: Mechanisms of plants conferring resistance to xenobiotics
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15:20 |
Ana-María Castillo: Application of tissue culture and biotechnology methods for plant breeding
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15:40 |
Wendy Harwood: High-throughput Agrobacterium-mediated transformation of barley
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16:00-16:30 |
Coffee break and poster viewing
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16:30 |
Huw D Jones: Regulatory sequences for defining transgene expression in wheat
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16:50 |
Dr Borislav Kobiljski: MAS in wheat – A new strategy proposal
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17:10 |
Andy Phillips: The wheat TILLING to identify novel alleles of candidate genes
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17:30 |
Valentina Talamè:. TILLmore: a reverse genetics resource for functional genomics in barley
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17:50 |
General discussion |
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Session 6: WG 2A Bioinformatics for WG3 and WG4 |
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Chair: Thomas Wicker
18:00 |
David Marshall: Where are all the genes in barley?
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18:20 |
Christos Ouzounis: Functional Genomics: transcription, interactions, disease genes
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18:40-19:00 |
Doreen Ware: Mathematical repeats and their uses for annotating plant genomes
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Session 7: Joint session (5 WGs) |
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Chairs: Alan Schulman and Catherine Feuillet
| 09:00-10:30 |
Reports from the WG coordinators of the discussions and perspectives for each WG. |
| 10:30-10:45 |
Catherine Feuillet: Report on the status of project applications to EU calls (FP7 and ERA-PG). |
10:45-11:00 |
Concluding remarks from the Action's Chairs (Alan Schulman and Catherine Feuillet)
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11:00-11:30 |
Coffee Break and poster viewing |
11:30-13:30 |
Management Committee meeting |
13:30-14:30 |
Lunch and transportation to Plant Gems 6 |
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